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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2695911_2697864_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2695911 - 2697864
Intron Length:
1954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTAATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTGTCTTTAATT
Flanking Amino Acid:
FSAKEYGHLQINAVSLFLIY
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
32.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
76.5
0.6
1
74.5
39.2
Minor 5ss
37.8
-1.4
3.5
55
49.2
Minor BPS
83.9
1.14
1
91.43
32.3

Associated Gene:

Gene:
PHKB
Ensembl Gene ID:
ENSAPLG00000011023
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021534
2679511 - 2752789
73279
ENSAPLT00000029733
2677355 - 2753671
76317
ENSAPLT00000045950
2679511 - 2752789
73279
ENSAPLT00000011611
2677355 - 2752789
75435
ENSAPLT00000029386
2679511 - 2750499
70989
ENSAPLT00000042937
2679511 - 2753671
74161
ENSAPLT00000026761
2679511 - 2754688
75178
ENSAPLT00000032847
2679511 - 2753671
74161
ENSAPLT00000025977
2679511 - 2753671
74161
ENSAPLT00000032239
2682921 - 2752789
69869