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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2697946_2704435_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2697946 - 2704435
Intron Length:
6490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAAAGA
5'SS Class:
major
3'SS Sequence:
TCTTGCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
CTTGCCTTACAG
Flanking Amino Acid:
GLQIIYNTDEVSFIQNLVFC
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
65.2
40.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
83.2
0.75
0.8
76.4
32.4
Minor 5ss
31.1
-2.2
3.2
40.8
45
Minor BPS
51.4
-0
2
60.06
47.5

Associated Gene:

Gene:
PHKB
Ensembl Gene ID:
ENSAPLG00000011023
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026761
2679511 - 2754688
75178
ENSAPLT00000032847
2679511 - 2753671
74161
ENSAPLT00000025977
2679511 - 2753671
74161
ENSAPLT00000032239
2682921 - 2752789
69869
ENSAPLT00000021534
2679511 - 2752789
73279
ENSAPLT00000029733
2677355 - 2753671
76317
ENSAPLT00000045950
2679511 - 2752789
73279
ENSAPLT00000011611
2677355 - 2752789
75435
ENSAPLT00000029386
2679511 - 2750499
70989
ENSAPLT00000042937
2679511 - 2753671
74161