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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2704552_2708840_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2704552 - 2708840
Intron Length:
4289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
YNNGSPELHSSSVGLAKAAL
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.3
39.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.7
0.89
0.6
89.1
19.9
Minor 5ss
30.6
-2.2
3.4
39.1
46.7
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
PHKB
Ensembl Gene ID:
ENSAPLG00000011023
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026761
2679511 - 2754688
75178
ENSAPLT00000032847
2679511 - 2753671
74161
ENSAPLT00000025977
2679511 - 2753671
74161
ENSAPLT00000032239
2682921 - 2752789
69869
ENSAPLT00000021534
2679511 - 2752789
73279
ENSAPLT00000029733
2677355 - 2753671
76317
ENSAPLT00000045950
2679511 - 2752789
73279
ENSAPLT00000011611
2677355 - 2752789
75435
ENSAPLT00000029386
2679511 - 2750499
70989
ENSAPLT00000042937
2679511 - 2753671
74161