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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2718825_2719405_F

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2718825 - 2719405
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATTT
5'SS Class:
major
3'SS Sequence:
TAAAACTCCATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTATTTACTT
Flanking Amino Acid:
LDPLLQHTSEGCPVVPKYYY
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
76.1
33.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
58.6
0.2
0.9
51
38.4
Minor 5ss
50.2
0.01
2.8
73.9
42.5
Minor BPS
59.5
0.38
1.8
78.91
37.7

Associated Gene:

Gene:
PHKB
Ensembl Gene ID:
ENSAPLG00000011023
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026761
2679511 - 2754688
75178
ENSAPLT00000032847
2679511 - 2753671
74161
ENSAPLT00000025977
2679511 - 2753671
74161
ENSAPLT00000032239
2682921 - 2752789
69869
ENSAPLT00000021534
2679511 - 2752789
73279
ENSAPLT00000029733
2677355 - 2753671
76317
ENSAPLT00000045950
2679511 - 2752789
73279
ENSAPLT00000011611
2677355 - 2752789
75435
ENSAPLT00000029386
2679511 - 2750499
70989
ENSAPLT00000042937
2679511 - 2753671
74161