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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2721483_2728073_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2721483 - 2728073
Intron Length:
6591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTA
5'SS Class:
strong_major
3'SS Sequence:
CACTGTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TACTTTTTCACT
Flanking Amino Acid:
RNVSMRFSNQGPLENDLVVH
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.5
0.53
0.9
65.1
40.9
Minor 5ss
41.4
-1
3.1
56.1
48
Minor BPS
60
0.4
1.7
75.92
41.3

Associated Gene:

Gene:
PHKB
Ensembl Gene ID:
ENSAPLG00000011023
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026761
2679511 - 2754688
75178
ENSAPLT00000032847
2679511 - 2753671
74161
ENSAPLT00000025977
2679511 - 2753671
74161
ENSAPLT00000032239
2682921 - 2752789
69869
ENSAPLT00000021534
2679511 - 2752789
73279
ENSAPLT00000029733
2677355 - 2753671
76317
ENSAPLT00000045950
2679511 - 2752789
73279
ENSAPLT00000011611
2677355 - 2752789
75435
ENSAPLT00000029386
2679511 - 2750499
70989
ENSAPLT00000042937
2679511 - 2753671
74161