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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2739819_2740634_F

Intron Information:

Intron Rank:
27
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2739819 - 2740634
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
GACATACATATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTCCATGATT
Flanking Amino Acid:
IYRRAGSKKLWLVLRYSAAF
Intron Amino Acid Position:
808

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.2
73.6
36.5
Major BPS
100
1.24
0.5
100
0
Major PPT
55.9
0.13
1
47.7
39.5
Minor 5ss
41.9
-0.9
2.5
49.3
41.1
Minor BPS
68.4
0.66
1.6
84.01
37.1

Associated Gene:

Gene:
PHKB
Ensembl Gene ID:
ENSAPLG00000011023
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032847
2679511 - 2753671
74161
ENSAPLT00000032239
2682921 - 2752789
69869
ENSAPLT00000021534
2679511 - 2752789
73279
ENSAPLT00000011611
2677355 - 2752789
75435
ENSAPLT00000045950
2679511 - 2752789
73279