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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2740726_2742759_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2740726 - 2742759
Intron Length:
2034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGC
5'SS Class:
major
3'SS Sequence:
CAATATACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TTGTCTTCAATA
Flanking Amino Acid:
ITTLLVHGKQVTLGAFGQEE
Intron Amino Acid Position:
839

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
67.2
39.2
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
67.3
0.39
1
59.5
40.8
Minor 5ss
36.4
-1.5
3.4
50.2
46.4
Minor BPS
67.8
0.55
1.5
75.21
36.9

Associated Gene:

Gene:
PHKB
Ensembl Gene ID:
ENSAPLG00000011023
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032847
2679511 - 2753671
74161
ENSAPLT00000032239
2682921 - 2752789
69869
ENSAPLT00000021534
2679511 - 2752789
73279
ENSAPLT00000011611
2677355 - 2752789
75435
ENSAPLT00000045950
2679511 - 2752789
73279