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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2750297_2750370_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2750297 - 2750370
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTGTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
ATAGCATTTACT
Flanking Amino Acid:
HNRSKGDEKQFALFLILCRE
Intron Amino Acid Position:
1042

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
82.1
24.6
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
70.6
0.46
1.1
71.2
38.7
Minor 5ss
31.3
-2.1
2.7
33.5
35.5
Minor BPS
50.7
0.1
2
72.56
43.6

Associated Gene:

Gene:
PHKB
Ensembl Gene ID:
ENSAPLG00000011023
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029386
2679511 - 2750499
70989