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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2750297_2752651_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2750297 - 2752651
Intron Length:
2355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
CAACACTTAACA
Flanking Amino Acid:
HNRSKGDEKQDDMTAFYNTH
Intron Amino Acid Position:
1078

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
82.1
24.6
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
85.6
0.8
0.7
80.7
24.6
Minor 5ss
31.3
-2.1
2.7
33.5
35.5
Minor BPS
60.1
0.31
1.6
64.49
40.9

Associated Gene:

Gene:
PHKB
Ensembl Gene ID:
ENSAPLG00000011023
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021534
2679511 - 2752789
73279
ENSAPLT00000032239
2682921 - 2752789
69869
ENSAPLT00000011611
2677355 - 2752789
75435
ENSAPLT00000029733
2677355 - 2753671
76317
ENSAPLT00000045950
2679511 - 2752789
73279
ENSAPLT00000026761
2679511 - 2754688
75178
ENSAPLT00000042937
2679511 - 2753671
74161
ENSAPLT00000025977
2679511 - 2753671
74161
ENSAPLT00000032847
2679511 - 2753671
74161