About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2752716_2754671_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2752716 - 2754671
Intron Length:
1956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
TATTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATCT
Flanking Amino Acid:
VGKKGTCSYLSDHIS*
Intron Amino Acid Position:
1093

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
58
46.6
Major BPS
100
1.24
0.5
100
0
Major PPT
86.5
0.82
0.7
85.9
28.3
Minor 5ss
35.6
-1.6
3.4
44.1
44.4
Minor BPS
72.3
0.78
1.8
93.48
34.4

Associated Gene:

Gene:
PHKB
Ensembl Gene ID:
ENSAPLG00000011023
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026761
2679511 - 2754688
75178