Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_27706_28925_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27706 - 28925

Intron Length:

1220

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTAAGTGTT

5'SS Class:

major

3'SS Sequence:

CTTTGTTTTTAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTAAA

U12 Branch Point Sequence:

TGCTCTGTAAAA

Flanking Amino Acid:

YAKYTIVKTKDVRVAMKAFM

Intron Amino Acid Position:

107

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

35.3

Major BPS

62.9

0.32

1.2

65.3

38.6

Major PPT

78.4

0.64

82.6

32.8

Minor 5ss

39.9

-1.1

3.4

54.7

43.6

Minor BPS

50.1

-0

2.1

64.9

41.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011417

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011896

3649 - 30288

26640