Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2790165_2790710_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

2790165 - 2790710

Intron Length:

546

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTGGG

5'SS Class:

major

3'SS Sequence:

TCTCCTTCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAG

U12 Branch Point Sequence:

GTGGCCTTATTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

63.1

43.4

Major BPS

67.2

0.43

1.5

77.4

37.3

Major PPT

82.2

0.73

0.7

81.1

24.1

Minor 5ss

25.2

-2.8

3.2

43.1

Minor BPS

58.3

0.34

1.7

72.26

45.1

Associated Gene:

Gene:

LONP2

Ensembl Gene ID:

ENSAPLG00000012127

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029640

2789975 - 2908734

118760