About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2869999_2870808_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2869999 - 2870808
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGCGAGC
5'SS Class:
major
3'SS Sequence:
GTTCTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TAATACAAAATG
Flanking Amino Acid:
SDCDDLPNLHRIGTAALAVQ
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.2
54.8
44.4
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
79.4
0.66
0.9
77.1
37.1
Minor 5ss
31.3
-2.1
3.4
42.5
44.6
Minor BPS
44.3
-0.5
2
51.65
42.4

Associated Gene:

Gene:
LONP2
Ensembl Gene ID:
ENSAPLG00000012127
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022355
2869766 - 2908734
38969
ENSAPLT00000012665
2869766 - 2911900
42135
ENSAPLT00000033298
2869766 - 2909343
39578