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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2870511_2870808_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2870511 - 2870808
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGCGTT
5'SS Class:
major
3'SS Sequence:
GTTCTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TAATACAAAATG
Flanking Amino Acid:
CFLVQMVQAEMIGTAALAVQ
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
78.2
36.4
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
79.4
0.66
0.9
77.1
37.1
Minor 5ss
44.7
-0.6
3.5
69
41.9
Minor BPS
44.3
-0.5
2
51.65
42.4

Associated Gene:

Gene:
LONP2
Ensembl Gene ID:
ENSAPLG00000012127
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038661
2870426 - 2908734
38309