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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2871979_2873263_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2871979 - 2873263
Intron Length:
1285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTATGT
5'SS Class:
major
3'SS Sequence:
TCTGTGCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTCTTATAACT
Flanking Amino Acid:
IRTSNQEKLQILDAVRLEER
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
67
39
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
71.9
0.49
0.9
69.5
36.8
Minor 5ss
45.8
-0.4
2.9
65.8
45.2
Minor BPS
66.6
0.6
1.6
85.99
33.4

Associated Gene:

Gene:
LONP2
Ensembl Gene ID:
ENSAPLG00000012127
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033298
2869766 - 2909343
39578
ENSAPLT00000029640
2789975 - 2908734
118760
ENSAPLT00000022355
2869766 - 2908734
38969
ENSAPLT00000012665
2869766 - 2911900
42135
ENSAPLT00000038661
2870426 - 2908734
38309