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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2873387_2874284_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2873387 - 2874284
Intron Length:
898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGGACC
5'SS Class:
major
3'SS Sequence:
ATCTATTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TTTCTGTTATCT
Flanking Amino Acid:
RKPKQDDDKRVVAIRPNRRI
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
63.1
41.4
Major BPS
54
0.1
1
59.7
32.6
Major PPT
74
0.54
0.8
68.8
36.3
Minor 5ss
39.2
-1.2
3
44.3
43.5
Minor BPS
53.1
0.17
2.3
80.81
41.1

Associated Gene:

Gene:
LONP2
Ensembl Gene ID:
ENSAPLG00000012127
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022355
2869766 - 2908734
38969
ENSAPLT00000012665
2869766 - 2911900
42135
ENSAPLT00000038661
2870426 - 2908734
38309
ENSAPLT00000033298
2869766 - 2909343
39578
ENSAPLT00000029640
2789975 - 2908734
118760