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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2874449_2875152_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2874449 - 2875152
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGAC
5'SS Class:
strong_major
3'SS Sequence:
CATGTACTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTAGCC
Flanking Amino Acid:
ALKVCLKEIKRLKKMPQSMP
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
69.5
35.6
Major BPS
100
1.24
0.5
100
0
Major PPT
73.3
0.52
1
62.7
43
Minor 5ss
29.3
-2.4
3.5
40.3
46.1
Minor BPS
69.6
0.59
1.8
84.02
34.8

Associated Gene:

Gene:
LONP2
Ensembl Gene ID:
ENSAPLG00000012127
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022355
2869766 - 2908734
38969
ENSAPLT00000012665
2869766 - 2911900
42135
ENSAPLT00000038661
2870426 - 2908734
38309
ENSAPLT00000033298
2869766 - 2909343
39578
ENSAPLT00000029640
2789975 - 2908734
118760