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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2875248_2877059_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2875248 - 2877059
Intron Length:
1812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCAATGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
TTGTCAATGATA
Flanking Amino Acid:
VELPWNKSTKDRLEIRAARI
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
63.4
0.3
1.1
59.3
40.8
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
50.8
0.02
1.9
68.44
37.9

Associated Gene:

Gene:
LONP2
Ensembl Gene ID:
ENSAPLG00000012127
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022355
2869766 - 2908734
38969
ENSAPLT00000012665
2869766 - 2911900
42135
ENSAPLT00000038661
2870426 - 2908734
38309
ENSAPLT00000033298
2869766 - 2909343
39578
ENSAPLT00000029640
2789975 - 2908734
118760