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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2892464_2893522_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2892464 - 2893522
Intron Length:
1059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATCCT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTATGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCTCTCTTACAA
Flanking Amino Acid:
PQVTTLDIITRYTREAGVRS
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
77.8
36.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
64.8
0.33
1
58.8
41.8
Minor 5ss
36.2
-1.6
3.1
51.2
45.2
Minor BPS
53.6
0.11
1.7
65.41
41

Associated Gene:

Gene:
LONP2
Ensembl Gene ID:
ENSAPLG00000012127
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029640
2789975 - 2908734
118760
ENSAPLT00000022355
2869766 - 2908734
38969
ENSAPLT00000012665
2869766 - 2911900
42135
ENSAPLT00000038661
2870426 - 2908734
38309
ENSAPLT00000033298
2869766 - 2909343
39578