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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2901388_2904847_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2901388 - 2904847
Intron Length:
3460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACATCC
5'SS Class:
major
3'SS Sequence:
GTGGTCCCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TATTTCTGAAAT
Flanking Amino Acid:
ILGPPMYEMEVSERLSQPGV
Intron Amino Acid Position:
647

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
69.5
36.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
71.5
0.48
1
66.7
40.6
Minor 5ss
44.7
-0.6
2.8
60.7
43.8
Minor BPS
68
0.64
1.5
83.5
36.6

Associated Gene:

Gene:
LONP2
Ensembl Gene ID:
ENSAPLG00000012127
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029640
2789975 - 2908734
118760
ENSAPLT00000022355
2869766 - 2908734
38969
ENSAPLT00000012665
2869766 - 2911900
42135
ENSAPLT00000038661
2870426 - 2908734
38309
ENSAPLT00000033298
2869766 - 2909343
39578