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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2905056_2906274_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2905056 - 2906274
Intron Length:
1219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTAGG
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACATTC
Flanking Amino Acid:
SNAKRYQLTNASGSFDLLDN
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
65.4
46
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
33.9
-1.8
3
38.8
41.6
Minor BPS
47.7
-0.2
2
67.1
38.8

Associated Gene:

Gene:
LONP2
Ensembl Gene ID:
ENSAPLG00000012127
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029640
2789975 - 2908734
118760
ENSAPLT00000022355
2869766 - 2908734
38969
ENSAPLT00000012665
2869766 - 2911900
42135
ENSAPLT00000038661
2870426 - 2908734
38309
ENSAPLT00000033298
2869766 - 2909343
39578