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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_29063_29377_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29063 - 29377
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTACAAGAAAC
Flanking Amino Acid:
VKPVTLEKGQICVVFSEELK
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.7
35.1
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
93.1
0.97
0.6
91.8
19
Minor 5ss
31.9
-2.1
3.1
40.7
45.3
Minor BPS
45.4
-0.3
2
64.5
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011417
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011896
3649 - 30288
26640