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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2906466_2908368_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2906466 - 2908368
Intron Length:
1903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTATGTATC
5'SS Class:
major
3'SS Sequence:
TTTTCCTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTTTCCTCATTA
Flanking Amino Acid:
EITLRGLVLPVGGIKDKVLA
Intron Amino Acid Position:
780

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
72
37.8
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
78.7
0.65
0.8
79.4
27.8
Minor 5ss
48.6
-0.1
2.4
68.5
35.9
Minor BPS
65.5
0.48
1.8
79.68
36.8

Associated Gene:

Gene:
LONP2
Ensembl Gene ID:
ENSAPLG00000012127
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029640
2789975 - 2908734
118760
ENSAPLT00000022355
2869766 - 2908734
38969
ENSAPLT00000012665
2869766 - 2911900
42135
ENSAPLT00000038661
2870426 - 2908734
38309
ENSAPLT00000033298
2869766 - 2909343
39578