Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2993940_2996076_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2993940 - 2996076

Intron Length:

2137

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTATAAGCA

5'SS Class:

major

3'SS Sequence:

TTTTGTTCCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

TCTACCTTAATT

Flanking Amino Acid:

DDFLRSEGCSRDFLSAQRAL

Intron Amino Acid Position:

784

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.54

63.8

34.2

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

0.79

0.8

80.2

Minor 5ss

36.2

-1.6

3.4

48.1

47.6

Minor BPS

80.9

1.05

1.2

88.64

36.5

Associated Gene:

Gene:

N4BP1

Ensembl Gene ID:

ENSAPLG00000012344

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023448

2992603 - 3011531

18929

ENSAPLT00000019234

2993603 - 3011531

17929

ENSAPLT00000012867

2993603 - 3011531

17929