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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2993940_2999623_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2993940 - 2999623
Intron Length:
5684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTACCTTAATT
Flanking Amino Acid:
LGARIAAHDDRDFLSAQRAL
Intron Amino Acid Position:
748

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
0.9
76.5
33.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
85
0.79
0.8
80.2
32
Minor 5ss
34.6
-1.8
3.2
47.3
48.3
Minor BPS
80.9
1.05
1.2
88.64
36.5

Associated Gene:

Gene:
N4BP1
Ensembl Gene ID:
ENSAPLG00000012344
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035178
2993603 - 3011531
17929