About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2999721_3000133_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2999721 - 3000133
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
CATGTTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTTAAAA
Flanking Amino Acid:
WRTRRDPYITEQDFLTQLQD
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.1
0.54
1
69.3
40.3
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
70.1
0.63
1.3
75.76
35.6

Associated Gene:

Gene:
N4BP1
Ensembl Gene ID:
ENSAPLG00000012344
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019234
2993603 - 3011531
17929
ENSAPLT00000035178
2993603 - 3011531
17929
ENSAPLT00000012867
2993603 - 3011531
17929
ENSAPLT00000027607
2993603 - 3011531
17929
ENSAPLT00000023448
2992603 - 3011531
18929