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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3000265_3007187_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3000265 - 3007187
Intron Length:
6923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
ATTCCTCCCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATTCCTTGCATT
Flanking Amino Acid:
IVIDGSNVAMSHGLKKFFSC
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
83.5
35
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
63.7
0.31
1
61.1
34.8
Minor 5ss
43.2
-0.7
2.9
61.1
37.5
Minor BPS
49.4
0.03
1.9
72.57
38.6

Associated Gene:

Gene:
N4BP1
Ensembl Gene ID:
ENSAPLG00000012344
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027607
2993603 - 3011531
17929
ENSAPLT00000023448
2992603 - 3011531
18929
ENSAPLT00000019234
2993603 - 3011531
17929
ENSAPLT00000012867
2993603 - 3011531
17929
ENSAPLT00000035178
2993603 - 3011531
17929