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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3008948_3011276_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3008948 - 3011276
Intron Length:
2329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGCGGG
5'SS Class:
major
3'SS Sequence:
TTTCTCCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TAAGTATTCATT
Flanking Amino Acid:
GGGKAVRCAKEYIKGLCEPE
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
58.2
46.8
Major BPS
100
1.24
0.5
100
0
Major PPT
80.6
0.69
0.7
73.9
31.2
Minor 5ss
34.7
-1.7
3.5
46.9
48.5
Minor BPS
44.8
-0.3
2
62.43
41.9

Associated Gene:

Gene:
N4BP1
Ensembl Gene ID:
ENSAPLG00000012344
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019234
2993603 - 3011531
17929
ENSAPLT00000035178
2993603 - 3011531
17929
ENSAPLT00000012867
2993603 - 3011531
17929
ENSAPLT00000027607
2993603 - 3011531
17929
ENSAPLT00000023448
2992603 - 3011531
18929