About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3020953_3023897_R

Intron Information:

Intron Rank:
145592
Intron Class:
major
Intron Phase:
Intron Coordinates:
3020953 - 3023897
Intron Length:
2945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TTATCCCCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TACGTTTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
72.4
0.5
0.9
67.9
33.2
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
49.5
-0
1.7
58.11
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025712
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027262
3020877 - 3024541
3665