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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3061540_3119793_F

Intron Information:

Intron Rank:
142913
Intron Class:
major
Intron Phase:
Intron Coordinates:
3061540 - 3119793
Intron Length:
58254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
TACTTGTGAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
42.7
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
33.7
-1.9
2.8
31.9
42.5
Minor BPS
46
-0.4
2.1
52.52
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027026
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040672
3049096 - 3120060
70965
ENSAPLT00000017526
3038032 - 3120060
82029