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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3072394_3072516_R

Intron Information:

Intron Rank:
140424
Intron Class:
major
Intron Phase:
Intron Coordinates:
3072394 - 3072516
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCATCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
86.9
30.1
Major BPS
100
1.24
0.5
100
0
Major PPT
81.1
0.7
0.8
75.7
32.7
Minor 5ss
34.8
-1.7
3.2
50.1
46.4
Minor BPS
59.4
0.29
1.8
71.25
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022937
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036147
3071829 - 3072959
1131