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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3129672_3130385_F

Intron Information:

Intron Rank:
142918
Intron Class:
major
Intron Phase:
Intron Coordinates:
3129672 - 3130385
Intron Length:
714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAG
5'SS Class:
major
3'SS Sequence:
GAACTTATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTGTTCTCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
69.5
37.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
69.3
0.43
1
59
45.6
Minor 5ss
45.7
-0.5
2.5
57.9
46.8
Minor BPS
70.8
0.63
1.5
78.21
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027026
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044240
3119794 - 3130965
11172