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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3130631_3130753_F

Intron Information:

Intron Rank:
142914
Intron Class:
major
Intron Phase:
Intron Coordinates:
3130631 - 3130753
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATAGT
5'SS Class:
major
3'SS Sequence:
TTTCTCCCAAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTCTCCCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.8
38.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
67.2
0.39
1
69.1
30.5
Minor 5ss
42.9
-0.8
2.7
60.2
44.3
Minor BPS
48.1
-0.1
1.9
67.35
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027026
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044240
3119794 - 3130965
11172
ENSAPLT00000039740
3130001 - 3130965
965