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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3172069_3180939_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3172069 - 3180939
Intron Length:
8871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGCGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
ATGTCATTAATT
Flanking Amino Acid:
REVCKSTIAEVVCFLLHLCG
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
72.3
39.5
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
63.9
0.31
1
57.8
38.5
Minor 5ss
38.2
-1.3
3.1
50.1
46.5
Minor BPS
71.4
0.75
1.5
83.69
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016202
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016956
3169461 - 3199295
29835