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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3181249_3181750_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3181249 - 3181750
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
TTCTGCTTCACA
Flanking Amino Acid:
RDDRERFCENTQAGEGRVYK
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79.9
34.9
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
81.2
0.7
0.8
75.6
33
Minor 5ss
34.4
-1.8
2.9
47
41.7
Minor BPS
58.4
0.26
2.2
74.7
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016202
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016956
3169461 - 3199295
29835