About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3181823_3183467_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3181823 - 3183467
Intron Length:
1645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTAAT
U12 Branch Point Sequence:
ATCCAGTTACCC
Flanking Amino Acid:
HKFEESMSEKCRDALTTRQK
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
32.7
Major BPS
61.6
0.29
1.3
63.6
42.5
Major PPT
76.7
0.6
0.8
70
30.9
Minor 5ss
35.9
-1.6
3.5
51.5
45.7
Minor BPS
42.6
-0.5
2.3
54.96
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016202
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016956
3169461 - 3199295
29835