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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3190065_3191999_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3190065 - 3191999
Intron Length:
1935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATGGAA
U12 Branch Point Sequence:
TAGTGGTGACTT
Flanking Amino Acid:
ELQYFISRDWKLDTVLYRKC
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
48.3
-0.1
1.3
47.1
37.9
Major PPT
82.3
0.73
0.8
76.6
32
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
38.6
-0.7
2.5
57.31
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016202
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016956
3169461 - 3199295
29835