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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3193926_3195246_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3193926 - 3195246
Intron Length:
1321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTGC
5'SS Class:
major
3'SS Sequence:
TCTGTTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TCTGTTTTAATA
Flanking Amino Acid:
WCSEKTETGQELECLQDHLD
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
57.8
42.2
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
76.2
0.59
0.9
73.3
36
Minor 5ss
36.1
-1.6
3.4
50.8
45.8
Minor BPS
65.4
0.48
1.3
69.67
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016202
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016956
3169461 - 3199295
29835