About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3195334_3199271_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3195334 - 3199271
Intron Length:
3938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCATGTGGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
CTTGCCTTCATG
Flanking Amino Acid:
VGNLTELESENLSGGHH*
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
75
0.62
1.1
77.2
36
Major PPT
57.4
0.17
1.2
59.4
40.6
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
54.9
0.01
2
62.41
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016202
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016956
3169461 - 3199295
29835