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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3198707_3199724_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3198707 - 3199724
Intron Length:
1018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAACATG
5'SS Class:
major
3'SS Sequence:
ATTTATCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGTGTTGTAATT
Flanking Amino Acid:
KQLRVEELEMTEDIRLEPEL
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
67.8
43.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.2
0.7
0.8
74.7
35.2
Minor 5ss
42.5
-0.8
3
54
44.5
Minor BPS
49.4
0.03
2.1
71.21
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002850
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028555
3195484 - 3232498
37015