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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3201672_3202014_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3201672 - 3202014
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCCCC
5'SS Class:
weak_major
3'SS Sequence:
CTTTCCTGGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATCTAATGAAGT
Flanking Amino Acid:
ITKRQITQNTDYRLNPVLRK
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.2
53.3
44.1
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
68.2
0.41
1
69.5
36.8
Minor 5ss
52.8
0.09
2.4
69.4
41.2
Minor BPS
45.2
-0.2
2.1
65.68
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002850
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028555
3195484 - 3232498
37015