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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3203854_3205673_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3203854 - 3205673
Intron Length:
1820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
CTGCCCATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TGTTTTGTAACA
Flanking Amino Acid:
CAAIPPGRGRQMSCLMEALE
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
75.7
40.1
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
72.9
0.52
0.9
65.3
34.9
Minor 5ss
40.2
-1.1
2.8
57.6
39.6
Minor BPS
60.6
0.33
2
75.16
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002850
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028555
3195484 - 3232498
37015