About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3212884_3215311_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3212884 - 3215311
Intron Length:
2428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGCT
5'SS Class:
strong_major
3'SS Sequence:
ACTTATCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
CTTTCTTTAAAC
Flanking Amino Acid:
WRDVVLLEQGRLAAGTTRFC
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
73.2
34.8
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
80.3
0.68
0.9
73.7
35.9
Minor 5ss
30.5
-2.2
3.8
47.1
48.5
Minor BPS
75.2
0.77
1.3
79.33
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002850
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002913
3212654 - 3232929
20276