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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3341615_3342474_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3341615 - 3342474
Intron Length:
860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCAT
5'SS Class:
strong_major
3'SS Sequence:
ATCATCCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
TGCTGCCTATCA
Flanking Amino Acid:
HVQELVPQKSRCPMVSLSYL
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.3
40.1
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
77.9
0.63
0.9
73.9
36
Minor 5ss
38.5
-1.3
3.4
55.3
48.9
Minor BPS
45.3
-0.3
2.3
60.61
45.1

Associated Gene:

Gene:
RFWD3
Ensembl Gene ID:
ENSAPLG00000016162
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016860
3339483 - 3361146
21664