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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3342652_3344815_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3342652 - 3344815
Intron Length:
2164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCAACAT
U12 Branch Point Sequence:
TGCTCGTGCAAA
Flanking Amino Acid:
AALDSTLKLTSLATNTVVQT
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
71.4
40.3
Major BPS
48.4
-0.1
1.2
54.9
39.1
Major PPT
90.2
0.9
0.6
85.5
21.7
Minor 5ss
35.1
-1.7
3.1
48.4
47.3
Minor BPS
40.2
-0.7
2.5
54.08
44.1

Associated Gene:

Gene:
RFWD3
Ensembl Gene ID:
ENSAPLG00000016162
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016860
3339483 - 3361146
21664