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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3346211_3350983_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3346211 - 3350983
Intron Length:
4773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
GCTTTCTGAGGT
Flanking Amino Acid:
ECSKLRRQVQELKALVAQHS
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
76.7
33.9
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
93.6
0.98
0.6
89.1
19.8
Minor 5ss
29.1
-2.4
2.7
33.3
41.7
Minor BPS
47.1
-0.1
2
64.98
45.4

Associated Gene:

Gene:
RFWD3
Ensembl Gene ID:
ENSAPLG00000016162
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016860
3339483 - 3361146
21664