About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3351099_3353273_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3351099 - 3353273
Intron Length:
2175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGAGG
5'SS Class:
major
3'SS Sequence:
GTTTTCCATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TGTTTTCCATCC
Flanking Amino Acid:
LDTSEQERMKRSIEKEQMLR
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
64.5
46.9
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
79.1
0.65
0.9
70.8
40.1
Minor 5ss
30.6
-2.2
3.3
39.8
45.8
Minor BPS
44.4
-0.4
2
59.58
39.6

Associated Gene:

Gene:
RFWD3
Ensembl Gene ID:
ENSAPLG00000016162
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016860
3339483 - 3361146
21664