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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3353366_3355477_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3353366 - 3355477
Intron Length:
2112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACCC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TGAAGGTGAACA
Flanking Amino Acid:
LRGQAGKCPQCNKKAKRSDI
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
65.8
38.4
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
100
1.12
0.4
100
0
Minor 5ss
32.6
-2
3.1
43.3
43.8
Minor BPS
41.8
-0.6
2.4
54.92
43.2

Associated Gene:

Gene:
RFWD3
Ensembl Gene ID:
ENSAPLG00000016162
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016860
3339483 - 3361146
21664