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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_3355676_3355771_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3355676 - 3355771
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTAAATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTTTCTTAAAT
Flanking Amino Acid:
DEGAEVQQKQRSPLKEPEPS
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.9
75.7
36.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
70.1
0.45
0.9
67.4
37.7
Minor 5ss
36.1
-1.6
3.3
47.1
48.3
Minor BPS
84.8
1.17
1.1
97.05
26.9

Associated Gene:

Gene:
RFWD3
Ensembl Gene ID:
ENSAPLG00000016162
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016860
3339483 - 3361146
21664