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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_33866_34518_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33866 - 34518
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTTTTGTTAACA
Flanking Amino Acid:
ASDGLIQLLPGDELYPEDPD
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
84.4
0.77
0.9
81
35.4
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
72.4
0.7
2
86.69
32.1

Associated Gene:

Gene:
NUDT19
Ensembl Gene ID:
ENSAPLG00000011800
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047871
33365 - 36913
3549
ENSAPLT00000041659
33639 - 36913
3275
ENSAPLT00000012276
33365 - 46908
13544